IL_4D67_002
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GAUCAG*CUGUC
- Length
- 11 nucleotides
- Bulged bases
- 4D67|1|2|U|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_002 not in the Motif Atlas
- Geometric match to IL_4WF9_084
- Geometric discrepancy: 0.3465
- The information below is about IL_4WF9_084
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
4D67|1|2|G|11
4D67|1|2|A|12
4D67|1|2|U|13
4D67|1|2|C|14
4D67|1|2|A|15
4D67|1|2|G|16
*
4D67|1|3|C|141
4D67|1|3|U|142
4D67|1|3|G|143
4D67|1|3|U|144
4D67|1|3|C|145
Current chains
- Chain 2
- 28S RRNA
- Chain 3
- 5.8S RRNA
Nearby chains
- Chain G
- 60S RIBOSOMAL PROTEIN L7A
- Chain N
- 60S RIBOSOMAL PROTEIN L15
- Chain X
- 60S RIBOSOMAL PROTEIN L23A
- Chain h
- 60S RIBOSOMAL PROTEIN L35
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