IL_4D67_063
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 4D67|1|2|U|1908, 4D67|1|2|C|1909, 4D67|1|2|G|2033
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_063 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.2413
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4D67|1|2|C|1904
4D67|1|2|U|1905
4D67|1|2|C|1906
4D67|1|2|A|1907
4D67|1|2|U|1908
4D67|1|2|C|1909
4D67|1|2|A|1910
4D67|1|2|G|1911
*
4D67|1|2|C|2031
4D67|1|2|U|2032
4D67|1|2|G|2033
4D67|1|2|G|2034
4D67|1|2|A|2035
4D67|1|2|G|2036
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain H
- 60S RIBOSOMAL PROTEIN L9
- Chain O
- 60S RIBOSOMAL PROTEIN L13A
- Chain S
- 60S RIBOSOMAL PROTEIN L18A
- Chain m
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
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