IL_4D67_067
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 4D67|1|2|G|2320
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_067 not in the Motif Atlas
- Homologous match to IL_5TBW_057
- Geometric discrepancy: 0.2672
- The information below is about IL_5TBW_057
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- Isolated cWS basepair
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
4D67|1|2|C|2266
4D67|1|2|G|2267
4D67|1|2|C|2268
*
4D67|1|2|G|2319
4D67|1|2|G|2320
4D67|1|2|U|2321
4D67|1|2|G|2322
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain C
- 60S RIBOSOMAL PROTEIN L4
- Chain a
- 60S RIBOSOMAL PROTEIN L27A
- Chain e
- 60S RIBOSOMAL PROTEIN L32
- Chain t
- 60S RIBOSOMAL PROTEIN L28
Coloring options: