IL_4D67_109

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D67_109 not in the Motif Atlas

Geometric match to IL_1MZP_003

Geometric discrepancy: 0.2267

The information below is about IL_1MZP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4D67|1|2|G|3939
4D67|1|2|G|3940
4D67|1|2|A|3941
4D67|1|2|G|3942
*
4D67|1|2|C|4006
4D67|1|2|G|4007
4D67|1|2|C|4008
4D67|1|2|C|4009
4D67|1|2|G|4010
4D67|1|2|G|4011
4D67|1|2|U|4012
4D67|1|2|G|4013
4D67|1|2|A|4014
4D67|1|2|A|4015
4D67|1|2|A|4016
4D67|1|2|U|4017
4D67|1|2|A|4018
4D67|1|2|C|4019

Current chains

Chain 2

28S RRNA

Nearby chains

Chain u

60S RIBOSOMAL PROTEIN L10A