IL_4D67_114
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GACC*GC
- Length
- 6 nucleotides
- Bulged bases
- 4D67|1|2|C|4309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_114 not in the Motif Atlas
- Geometric match to IL_4V83_236
- Geometric discrepancy: 0.2531
- The information below is about IL_4V83_236
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_90729.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 30
Unit IDs
4D67|1|2|G|4307
4D67|1|2|A|4308
4D67|1|2|C|4309
4D67|1|2|C|4310
*
4D67|1|2|G|4324
4D67|1|2|C|4325
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain L
- 60S RIBOSOMAL PROTEIN L13
- Chain Q
- 60S RIBOSOMAL PROTEIN L18
- Chain a
- 60S RIBOSOMAL PROTEIN L27A
- Chain o
- 60S RIBOSOMAL PROTEIN L36A
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