IL_4D67_199
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- AUUAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 4D67|1|2|A|4668
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_199 not in the Motif Atlas
- Homologous match to IL_8P9A_348
- Geometric discrepancy: 0.2079
- The information below is about IL_8P9A_348
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
4D67|1|2|A|4641
4D67|1|2|U|4642
4D67|1|2|U|4643
4D67|1|2|A|4644
4D67|1|2|U|4645
*
4D67|1|2|A|4665
4D67|1|2|G|4666
4D67|1|2|A|4667
4D67|1|2|A|4668
4D67|1|2|U|4669
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain H
- 60S RIBOSOMAL PROTEIN L9
- Chain O
- 60S RIBOSOMAL PROTEIN L13A
- Chain m
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
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