IL_4D67_220
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- ACAUUU*ACCAU
- Length
- 11 nucleotides
- Bulged bases
- 4D67|1|2|C|4630
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_220 not in the Motif Atlas
- Homologous match to IL_8GLP_317
- Geometric discrepancy: 0.3329
- The information below is about IL_8GLP_317
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31690.2
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
4D67|1|2|A|4584
4D67|1|2|C|4585
4D67|1|2|A|4586
4D67|1|2|U|4587
4D67|1|2|U|4588
4D67|1|2|U|4589
*
4D67|1|2|A|4629
4D67|1|2|C|4630
4D67|1|2|C|4631
4D67|1|2|A|4632
4D67|1|2|U|4633
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain B
- 60S RIBOSOMAL PROTEIN L3
- Chain V
- 60S RIBOSOMAL PROTEIN L23
- Chain W
- 60S RIBOSOMAL PROTEIN L24
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