IL_4TUB_050

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_050 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1257

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4TUB|1|QA|C|1303
4TUB|1|QA|G|1304
4TUB|1|QA|G|1305
4TUB|1|QA|A|1306
4TUB|1|QA|U|1307
4TUB|1|QA|U|1308
*
4TUB|1|QA|A|1329
4TUB|1|QA|U|1330
4TUB|1|QA|G|1331
4TUB|1|QA|A|1332
4TUB|1|QA|A|1333
4TUB|1|QA|G|1334

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx