IL_4TUB_106

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

4TUB|1|RA|G|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_106 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3879

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4TUB|1|RA|G|1365
4TUB|1|RA|C|1366
4TUB|1|RA|A|1367
4TUB|1|RA|A|1368
4TUB|1|RA|U|1369
4TUB|1|RA|G|1370
*
4TUB|1|RA|C|1376
4TUB|1|RA|A|1377
4TUB|1|RA|G|1378
4TUB|1|RA|C|1379

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RW

50S ribosomal protein L22

Chain RX

50S ribosomal protein L23