IL_4UG0_071

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_071 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1233

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4UG0|1|L5|G|2358
4UG0|1|L5|U|2359
4UG0|1|L5|A|2360
4UG0|1|L5|G|2361
4UG0|1|L5|U|2362
4UG0|1|L5|A|2363
4UG0|1|L5|G|2364
*
4UG0|1|L5|C|3858
4UG0|1|L5|G|3859
4UG0|1|L5|A|3860
4UG0|1|L5|A|3861
4UG0|1|L5|A|3862
4UG0|1|L5|C|3863

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S RIBOSOMAL PROTEIN L4

Chain LP

60S RIBOSOMAL PROTEIN L17