IL_4UG0_215

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_215 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2041

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4UG0|1|S2|C|1713
4UG0|1|S2|U|1714
4UG0|1|S2|A|1715
4UG0|1|S2|C|1716
*
4UG0|1|S2|G|1817
4UG0|1|S2|A|1818
4UG0|1|S2|A|1819
4UG0|1|S2|G|1820

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S RIBOSOMAL PROTEIN L41

Chain SX

40S RIBOSOMAL PROTEIN S23