IL_4UJC_002
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GAUCAG*CUGUC
- Length
- 11 nucleotides
- Bulged bases
- 4UJC|1|A2|U|13
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_002 not in the Motif Atlas
- Geometric match to IL_4WF9_084
- Geometric discrepancy: 0.3465
- The information below is about IL_4WF9_084
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
4UJC|1|A2|G|11
4UJC|1|A2|A|12
4UJC|1|A2|U|13
4UJC|1|A2|C|14
4UJC|1|A2|A|15
4UJC|1|A2|G|16
*
4UJC|1|A3|C|141
4UJC|1|A3|U|142
4UJC|1|A3|G|143
4UJC|1|A3|U|144
4UJC|1|A3|C|145
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
- Chain A3
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain BG
- 60S RIBOSOMAL PROTEIN L7A
- Chain BN
- 60S RIBOSOMAL PROTEIN L15
- Chain BX
- 60S RIBOSOMAL PROTEIN L23A
- Chain Bh
- 60S RIBOSOMAL PROTEIN UL29
Coloring options: