IL_4UJC_051
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CCGGUAA*UAAAUGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_051 not in the Motif Atlas
- Homologous match to IL_8C3A_041
- Geometric discrepancy: 0.1787
- The information below is about IL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4UJC|1|A2|C|1710
4UJC|1|A2|C|1711
4UJC|1|A2|G|1712
4UJC|1|A2|G|1713
4UJC|1|A2|U|1714
4UJC|1|A2|A|1715
4UJC|1|A2|A|1716
*
4UJC|1|A2|U|1771
4UJC|1|A2|A|1772
4UJC|1|A2|A|1773
4UJC|1|A2|A|1774
4UJC|1|A2|U|1775
4UJC|1|A2|G|1776
4UJC|1|A2|G|1777
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- 60S RIBOSOMAL PROTEIN L7
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
- Chain BT
- 60S RIBOSOMAL PROTEIN L21
Coloring options: