IL_4UJC_063
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 4UJC|1|A2|U|1908, 4UJC|1|A2|C|1909, 4UJC|1|A2|G|2033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_063 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.2413
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4UJC|1|A2|C|1904
4UJC|1|A2|U|1905
4UJC|1|A2|C|1906
4UJC|1|A2|A|1907
4UJC|1|A2|U|1908
4UJC|1|A2|C|1909
4UJC|1|A2|A|1910
4UJC|1|A2|G|1911
*
4UJC|1|A2|C|2031
4UJC|1|A2|U|2032
4UJC|1|A2|G|2033
4UJC|1|A2|G|2034
4UJC|1|A2|A|2035
4UJC|1|A2|G|2036
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain BH
- 60S RIBOSOMAL PROTEIN L9
- Chain BO
- 60S RIBOSOMAL PROTEIN L13A
- Chain BS
- 60S RIBOSOMAL PROTEIN L18A
- Chain Bm
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
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