IL_4UJC_067

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

4UJC|1|A2|G|2320

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_067 not in the Motif Atlas

Homologous match to IL_5TBW_057

Geometric discrepancy: 0.2672

The information below is about IL_5TBW_057

Detailed Annotation

Isolated cWS basepair

Broad Annotation

Isolated cWS basepair

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

4UJC|1|A2|C|2266
4UJC|1|A2|G|2267
4UJC|1|A2|C|2268
*
4UJC|1|A2|G|2319
4UJC|1|A2|G|2320
4UJC|1|A2|U|2321
4UJC|1|A2|G|2322

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain Ba

60S RIBOSOMAL PROTEIN L27A

Chain Be

60S RIBOSOMAL PROTEIN L32

Chain Bt

60S RIBOSOMAL PROTEIN L28