IL_4UJC_078
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CGAUC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_078 not in the Motif Atlas
- Homologous match to IL_5TBW_067
- Geometric discrepancy: 0.2054
- The information below is about IL_5TBW_067
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
4UJC|1|A2|C|2566
4UJC|1|A2|G|2567
4UJC|1|A2|A|2568
4UJC|1|A2|U|2569
4UJC|1|A2|C|2570
*
4UJC|1|A2|G|2729
4UJC|1|A2|G|2730
4UJC|1|A2|G|2731
4UJC|1|A2|A|2732
4UJC|1|A2|G|2733
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain BA
- 60S RIBOSOMAL PROTEIN L8
- Chain BG
- 60S RIBOSOMAL PROTEIN L7A
- Chain BZ
- 60S RIBOSOMAL PROTEIN L27
- Chain Bg
- 60S RIBOSOMAL PROTEIN L34
Coloring options: