IL_4UJC_114

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

4UJC|1|A2|C|4309

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_114 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.2531

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

4UJC|1|A2|G|4307
4UJC|1|A2|A|4308
4UJC|1|A2|C|4309
4UJC|1|A2|C|4310
*
4UJC|1|A2|G|4324
4UJC|1|A2|C|4325

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BL

60S RIBOSOMAL PROTEIN L13

Chain BQ

60S RIBOSOMAL PROTEIN L18

Chain Ba

60S RIBOSOMAL PROTEIN L27A

Chain Bo

60S RIBOSOMAL PROTEIN L36A