IL_4UJC_157

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_157 not in the Motif Atlas

Geometric match to IL_4WZM_001

Geometric discrepancy: 0.2186

The information below is about IL_4WZM_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4UJC|1|A4|U|79
4UJC|1|A4|U|80
4UJC|1|A4|G|81
*
4UJC|1|A4|C|95
4UJC|1|A4|U|96
4UJC|1|A4|G|97

Current chains

Chain A4

5S RIBOSOMAL RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BF

60S RIBOSOMAL PROTEIN L7

Chain BS

60S RIBOSOMAL PROTEIN L18A