IL_4UJC_196
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_196 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.2005
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
4UJC|1|C1|C|676
4UJC|1|C1|G|677
4UJC|1|C1|U|678
4UJC|1|C1|A|679
4UJC|1|C1|G|680
*
4UJC|1|C1|U|1025
4UJC|1|C1|C|1026
4UJC|1|C1|A|1027
4UJC|1|C1|A|1028
4UJC|1|C1|G|1029
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain CL
- 40S RIBOSOMAL PROTEIN US17
- Chain CN
- 40S RIBOSOMAL PROTEIN US15
- Chain CW
- 40S RIBOSOMAL PROTEIN US8
- Chain CX
- 40S RIBOSOMAL PROTEIN US12
Coloring options: