IL_4UJC_207
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_207 not in the Motif Atlas
- Homologous match to IL_4V88_432
- Geometric discrepancy: 0.2037
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4UJC|1|C1|G|942
4UJC|1|C1|U|943
4UJC|1|C1|A|944
4UJC|1|C1|U|945
*
4UJC|1|C1|A|981
4UJC|1|C1|G|982
4UJC|1|C1|A|983
4UJC|1|C1|C|984
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain BA
- 60S RIBOSOMAL PROTEIN L8
- Chain CB
- 40S RIBOSOMAL PROTEIN ES1
- Chain CO
- 40S RIBOSOMAL PROTEIN US11
- Chain Ca
- 40S RIBOSOMAL PROTEIN ES26
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