IL_4UJC_226
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 4UJC|1|C1|U|1494, 4UJC|1|C1|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_226 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1989
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4UJC|1|C1|U|1333
4UJC|1|C1|G|1334
4UJC|1|C1|G|1335
*
4UJC|1|C1|U|1492
4UJC|1|C1|C|1493
4UJC|1|C1|U|1494
4UJC|1|C1|G|1495
4UJC|1|C1|U|1496
4UJC|1|C1|G|1497
4UJC|1|C1|A|1498
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain CD
- 40S RIBOSOMAL PROTEIN US3
- Chain CK
- 40S RIBOSOMAL PROTEIN ES10
- Chain CU
- 40S RIBOSOMAL PROTEIN US10
- Chain Cd
- 40S RIBOSOMAL PROTEIN US14
Coloring options: