IL_4UJD_040

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_040 not in the Motif Atlas

Geometric match to IL_7A0S_076

Geometric discrepancy: 0.3257

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

4UJD|1|A2|C|1453
4UJD|1|A2|G|1454
4UJD|1|A2|C|1455
*
4UJD|1|A2|G|1468
4UJD|1|A2|G|1469

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain Aa

60S RIBOSOMAL PROTEIN L27A

Chain Ab

60S RIBOSOMAL PROTEIN L29

Chain Ao

60S RIBOSOMAL PROTEIN L36A