IL_4UJD_051
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CCGGUAA*UAAAUGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_051 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.1645
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4UJD|1|A2|C|1710
4UJD|1|A2|C|1711
4UJD|1|A2|G|1712
4UJD|1|A2|G|1713
4UJD|1|A2|U|1714
4UJD|1|A2|A|1715
4UJD|1|A2|A|1716
*
4UJD|1|A2|U|1771
4UJD|1|A2|A|1772
4UJD|1|A2|A|1773
4UJD|1|A2|A|1774
4UJD|1|A2|U|1775
4UJD|1|A2|G|1776
4UJD|1|A2|G|1777
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- 60S RIBOSOMAL PROTEIN L7
- Chain AI
- 60S RIBOSOMAL PROTEIN L10
- Chain AT
- 60S RIBOSOMAL PROTEIN L21
Coloring options: