IL_4UJD_084

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_084 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.1896

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4UJD|1|A2|A|2809
4UJD|1|A2|A|2810
4UJD|1|A2|C|2811
4UJD|1|A2|A|2812
4UJD|1|A2|A|2813
4UJD|1|A2|U|2814
4UJD|1|A2|G|2815
*
4UJD|1|A2|C|3819
4UJD|1|A2|U|3820
4UJD|1|A2|A|3821
4UJD|1|A2|U|3822

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AB

60S RIBOSOMAL PROTEIN L3

Chain AP

60S RIBOSOMAL PROTEIN L17

Chain Ad

60S RIBOSOMAL PROTEIN L31