IL_4UJD_111
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_111 not in the Motif Atlas
- Homologous match to IL_5TBW_099
- Geometric discrepancy: 0.3121
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
4UJD|1|A2|C|4203
4UJD|1|A2|A|4204
4UJD|1|A2|G|4205
*
4UJD|1|A2|C|4223
4UJD|1|A2|G|4224
4UJD|1|A2|U|4225
4UJD|1|A2|G|4226
4UJD|1|A2|G|4227
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- 60S RIBOSOMAL PROTEIN L5
- Chain AJ
- 60S RIBOSOMAL PROTEIN L11
- Chain AT
- 60S RIBOSOMAL PROTEIN L21
Coloring options: