IL_4UJD_113

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

4UJD|1|A2|C|4309

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_113 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.253

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4UJD|1|A2|G|4307
4UJD|1|A2|A|4308
4UJD|1|A2|C|4309
4UJD|1|A2|C|4310
*
4UJD|1|A2|G|4324
4UJD|1|A2|C|4325

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AL

60S RIBOSOMAL PROTEIN L13

Chain AQ

60S RIBOSOMAL PROTEIN L18

Chain Aa

60S RIBOSOMAL PROTEIN L27A

Chain Ao

60S RIBOSOMAL PROTEIN L36A