IL_4UJD_127
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_127 not in the Motif Atlas
- Homologous match to IL_5TBW_116
- Geometric discrepancy: 0.2611
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4UJD|1|A2|C|4556
4UJD|1|A2|U|4557
4UJD|1|A2|C|4558
4UJD|1|A2|A|4559
4UJD|1|A2|G|4560
4UJD|1|A2|U|4561
4UJD|1|A2|A|4562
4UJD|1|A2|C|4563
*
4UJD|1|A2|G|4568
4UJD|1|A2|G|4569
4UJD|1|A2|A|4570
4UJD|1|A2|A|4571
4UJD|1|A2|C|4572
4UJD|1|A2|C|4573
4UJD|1|A2|G|4574
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AB
- 60S RIBOSOMAL PROTEIN L3
- Chain AH
- 60S RIBOSOMAL PROTEIN L9
- Chain Am
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
- Chain BB
- EIF5B
Coloring options: