IL_4UJD_180
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 4UJD|1|C1|U|361, 4UJD|1|C1|C|399
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_180 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1551
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
4UJD|1|C1|U|359
4UJD|1|C1|A|360
4UJD|1|C1|U|361
4UJD|1|C1|C|362
4UJD|1|C1|A|363
4UJD|1|C1|A|364
*
4UJD|1|C1|U|396
4UJD|1|C1|G|397
4UJD|1|C1|A|398
4UJD|1|C1|C|399
4UJD|1|C1|C|400
4UJD|1|C1|A|401
4UJD|1|C1|C|402
4UJD|1|C1|G|403
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain CI
- 40S RIBOSOMAL PROTEIN ES8
- Chain CL
- 40S RIBOSOMAL PROTEIN US17
- Chain CX
- 40S RIBOSOMAL PROTEIN US12
Coloring options: