IL_4UJD_206

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_206 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.2037

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4UJD|1|C1|G|942
4UJD|1|C1|U|943
4UJD|1|C1|A|944
4UJD|1|C1|U|945
*
4UJD|1|C1|A|981
4UJD|1|C1|G|982
4UJD|1|C1|A|983
4UJD|1|C1|C|984

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CB

40S RIBOSOMAL PROTEIN ES1

Chain CO

40S RIBOSOMAL PROTEIN ES11

Chain Ca

40S RIBOSOMAL PROTEIN ES26