IL_4UJD_209

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_209 not in the Motif Atlas

Geometric match to IL_4V88_436

Geometric discrepancy: 0.1927

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4UJD|1|C1|C|1047
4UJD|1|C1|G|1048
4UJD|1|C1|A|1049
4UJD|1|C1|A|1050
4UJD|1|C1|G|1051
*
4UJD|1|C1|C|1067
4UJD|1|C1|G|1068
4UJD|1|C1|U|1069
4UJD|1|C1|A|1070
4UJD|1|C1|G|1071

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain CO

40S RIBOSOMAL PROTEIN ES11