IL_4UJD_240
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_240 not in the Motif Atlas
- Geometric match to IL_4V88_466
- Geometric discrepancy: 0.3401
- The information below is about IL_4V88_466
- Detailed Annotation
- Non canonical cWW and near pair
- Broad Annotation
- Non canonical cWW and near pair
- Motif group
- IL_90170.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4UJD|1|C1|C|1708
4UJD|1|C1|G|1709
4UJD|1|C1|C|1710
4UJD|1|C1|U|1711
*
4UJD|1|C1|A|1822
4UJD|1|C1|A|1823
4UJD|1|C1|A|1824
4UJD|1|C1|A|1825
4UJD|1|C1|G|1826
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S RIBOSOMAL PROTEIN L41
- Chain BC
- Internal ribosome entry site; IRES
- Chain CX
- 40S RIBOSOMAL PROTEIN US12
Coloring options: