IL_4UJD_307

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_307 not in the Motif Atlas

Homologous match to IL_8C3A_452

Geometric discrepancy: 0.2188

The information below is about IL_8C3A_452

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

4UJD|1|C1|G|1270
4UJD|1|C1|C|1271
4UJD|1|C1|C|1272
*
4UJD|1|C1|G|1510
4UJD|1|C1|U|1511
4UJD|1|C1|C|1512

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CK

40S RIBOSOMAL PROTEIN ES10

Chain Cd

40S RIBOSOMAL PROTEIN US14

Chain Cf

40S RIBOSOMAL PROTEIN ES31