IL_4UJE_026

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGGC*GUGUUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_026 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2805

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4UJE|1|A2|U|738
4UJE|1|A2|G|739
4UJE|1|A2|G|740
4UJE|1|A2|C|741
*
4UJE|1|A2|G|894
4UJE|1|A2|U|895
4UJE|1|A2|G|896
4UJE|1|A2|U|897
4UJE|1|A2|U|898
4UJE|1|A2|A|899

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CH

60S RIBOSOMAL PROTEIN L9

Chain CS

60S RIBOSOMAL PROTEIN L18A