IL_4UJE_128

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_128 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2611

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4UJE|1|A2|C|4556
4UJE|1|A2|U|4557
4UJE|1|A2|C|4558
4UJE|1|A2|A|4559
4UJE|1|A2|G|4560
4UJE|1|A2|U|4561
4UJE|1|A2|A|4562
4UJE|1|A2|C|4563
*
4UJE|1|A2|G|4568
4UJE|1|A2|G|4569
4UJE|1|A2|A|4570
4UJE|1|A2|A|4571
4UJE|1|A2|C|4572
4UJE|1|A2|C|4573
4UJE|1|A2|G|4574

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CB

60S RIBOSOMAL PROTEIN L3

Chain CH

60S RIBOSOMAL PROTEIN L9

Chain Cm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40