IL_4UJE_159

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GCAU*AUAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_159 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.2714

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4UJE|1|B1|G|23
4UJE|1|B1|C|24
4UJE|1|B1|A|25
4UJE|1|B1|U|26
*
4UJE|1|B1|A|648
4UJE|1|B1|U|649
4UJE|1|B1|A|650
4UJE|1|B1|U|651

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BJ

40S RIBOSOMAL PROTEIN S9

Chain BX

40S RIBOSOMAL PROTEIN S23