IL_4UJE_166

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

4UJE|1|B1|G|113, 4UJE|1|B1|G|114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_166 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.2712

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4UJE|1|B1|U|112
4UJE|1|B1|G|113
4UJE|1|B1|G|114
4UJE|1|B1|U|115
*
4UJE|1|B1|A|348
4UJE|1|B1|A|349

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BE

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain BI

40S RIBOSOMAL PROTEIN S8

Chain BL

40S RIBOSOMAL PROTEIN S11