IL_4UJE_196

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_196 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.2459

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4UJE|1|B1|G|928
4UJE|1|B1|G|929
4UJE|1|B1|C|930
4UJE|1|B1|C|931
*
4UJE|1|B1|G|1010
4UJE|1|B1|A|1011
4UJE|1|B1|A|1012
4UJE|1|B1|U|1013

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BB

40S RIBOSOMAL PROTEIN S3A

Chain BN

40S RIBOSOMAL PROTEIN S13

Chain Bb

40S RIBOSOMAL PROTEIN S27