IL_4UJE_201

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_201 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.1927

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4UJE|1|B1|C|1047
4UJE|1|B1|G|1048
4UJE|1|B1|A|1049
4UJE|1|B1|A|1050
4UJE|1|B1|G|1051
*
4UJE|1|B1|C|1067
4UJE|1|B1|G|1068
4UJE|1|B1|U|1069
4UJE|1|B1|A|1070
4UJE|1|B1|G|1071

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BO

40S RIBOSOMAL PROTEIN S14

Chain CA

60S RIBOSOMAL PROTEIN L8