IL_4UJE_232

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_232 not in the Motif Atlas

Homologous match to IL_4V88_466

Geometric discrepancy: 0.3401

The information below is about IL_4V88_466

Detailed Annotation

Non canonical cWW and near pair

Broad Annotation

Non canonical cWW and near pair

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4UJE|1|B1|C|1708
4UJE|1|B1|G|1709
4UJE|1|B1|C|1710
4UJE|1|B1|U|1711
*
4UJE|1|B1|A|1822
4UJE|1|B1|A|1823
4UJE|1|B1|A|1824
4UJE|1|B1|A|1825
4UJE|1|B1|G|1826

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AX

Messenger RNA

Chain BX

40S RIBOSOMAL PROTEIN S23