IL_4UJE_281

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

4UJE|1|A2|A|4668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_281 not in the Motif Atlas

Homologous match to IL_8P9A_348

Geometric discrepancy: 0.208

The information below is about IL_8P9A_348

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

4UJE|1|A2|A|4641
4UJE|1|A2|U|4642
4UJE|1|A2|U|4643
4UJE|1|A2|A|4644
4UJE|1|A2|U|4645
*
4UJE|1|A2|A|4665
4UJE|1|A2|G|4666
4UJE|1|A2|A|4667
4UJE|1|A2|A|4668
4UJE|1|A2|U|4669

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CH

60S RIBOSOMAL PROTEIN L9

Chain CO

60S RIBOSOMAL PROTEIN L13A

Chain Cm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40