IL_4UJE_284

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGUC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_284 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.213

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4UJE|1|A2|G|4727
4UJE|1|A2|G|4728
4UJE|1|A2|U|4729
4UJE|1|A2|C|4730
*
4UJE|1|A2|G|4818
4UJE|1|A2|U|4819
4UJE|1|A2|C|4820
4UJE|1|A2|C|4821

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CH

60S RIBOSOMAL PROTEIN L9

Chain CM

60S RIBOSOMAL PROTEIN L14

Chain CO

60S RIBOSOMAL PROTEIN L13A