IL_4UJE_298

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_298 not in the Motif Atlas

Homologous match to IL_8C3A_452

Geometric discrepancy: 0.2189

The information below is about IL_8C3A_452

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

4UJE|1|B1|G|1270
4UJE|1|B1|C|1271
4UJE|1|B1|C|1272
*
4UJE|1|B1|G|1510
4UJE|1|B1|U|1511
4UJE|1|B1|C|1512

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BK

40S RIBOSOMAL PROTEIN S10

Chain Bd

40S RIBOSOMAL PROTEIN S29

Chain Bf

UBIQUITIN-40S RIBOSOMAL PROTEIN S27A