IL_4UJE_327

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

4UJE|1|B1|U|969, 4UJE|1|B1|G|970

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_327 not in the Motif Atlas

Geometric match to IL_7A0S_004

Geometric discrepancy: 0.3272

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4UJE|1|B1|G|952
4UJE|1|B1|C|953
4UJE|1|B1|U|954
4UJE|1|B1|A|955
4UJE|1|B1|G|956
*
4UJE|1|B1|C|967
4UJE|1|B1|U|968
4UJE|1|B1|U|969
4UJE|1|B1|G|970
4UJE|1|B1|G|971
4UJE|1|B1|A|972
4UJE|1|B1|C|973
4UJE|1|B1|C|974

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BB

40S RIBOSOMAL PROTEIN S3A

Chain BO

40S RIBOSOMAL PROTEIN S14