IL_4V49_035

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_035 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.1123

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V49|1|AA|G|887
4V49|1|AA|G|888
4V49|1|AA|A|889
4V49|1|AA|G|890
4V49|1|AA|U|891
4V49|1|AA|A|892
4V49|1|AA|C|893
4V49|1|AA|G|894
*
4V49|1|AA|U|905
4V49|1|AA|G|906
4V49|1|AA|A|907
4V49|1|AA|A|908
4V49|1|AA|A|909
4V49|1|AA|C|910

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain B0

Large subunit ribosomal RNA; LSU rRNA