IL_4V49_066

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

ACGAG*CUUUGACU

Length

13 nucleotides

Bulged bases

4V49|1|B0|U|99

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_066 not in the Motif Atlas

Homologous match to IL_7A0S_004

Geometric discrepancy: 0.3812

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V49|1|B0|A|80
4V49|1|B0|C|81
4V49|1|B0|G|82
4V49|1|B0|A|83
4V49|1|B0|G|84
*
4V49|1|B0|C|96
4V49|1|B0|U|97
4V49|1|B0|U|98
4V49|1|B0|U|99
4V49|1|B0|G|100
4V49|1|B0|A|101
4V49|1|B0|C|102
4V49|1|B0|U|103

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BS

50S ribosomal protein L24

Chain BW

50S ribosomal protein L29