IL_4V49_108

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_108 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.1574

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V49|1|B0|U|1370
4V49|1|B0|G|1371
4V49|1|B0|A|1372
4V49|1|B0|G|1373
4V49|1|B0|G|1374
*
4V49|1|B0|C|1383
4V49|1|B0|G|1384
4V49|1|B0|C|1385
4V49|1|B0|A|1386
4V49|1|B0|G|1387

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BA

50S ribosomal protein L2

Chain BY

50S ribosomal protein L31