IL_4V4A_022

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V4A|1|AA|A|532, 4V4A|1|AA|U|534

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_022 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1463

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V4A|1|AA|G|515
4V4A|1|AA|U|516
4V4A|1|AA|G|517
4V4A|1|AA|C|518
4V4A|1|AA|C|519
4V4A|1|AA|A|520
4V4A|1|AA|G|521
*
4V4A|1|AA|C|528
4V4A|1|AA|G|529
4V4A|1|AA|G|530
4V4A|1|AA|U|531
4V4A|1|AA|A|532
4V4A|1|AA|A|533
4V4A|1|AA|U|534
4V4A|1|AA|A|535
4V4A|1|AA|C|536

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12