IL_4V4A_097

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V4A|1|B0|U|1044

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_097 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.3039

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V4A|1|B0|G|1042
4V4A|1|B0|A|1043
4V4A|1|B0|U|1044
4V4A|1|B0|G|1045
*
4V4A|1|B0|C|1132
4V4A|1|B0|G|1133
4V4A|1|B0|C|1134

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BE

50S ribosomal protein L6

Chain BK

50S ribosomal protein L16