IL_4V4A_109

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

4V4A|1|B0|U|1600, 4V4A|1|B0|U|1601

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_109 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.4575

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_69229.4

Basepair signature

cWW-tSS-tSH-L-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V4A|1|B0|U|1426
4V4A|1|B0|G|1427
4V4A|1|B0|G|1428
4V4A|1|B0|A|1429
4V4A|1|B0|G|1430
*
4V4A|1|B0|C|1598
4V4A|1|B0|G|1599
4V4A|1|B0|U|1600
4V4A|1|B0|U|1601
4V4A|1|B0|G|1602
4V4A|1|B0|A|1603
4V4A|1|B0|A|1604
4V4A|1|B0|A|1605

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains