IL_4V4I_015

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CAGC*GUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_015 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2536

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V4I|1|w|C|288
4V4I|1|w|A|289
4V4I|1|w|G|290
4V4I|1|w|C|291
*
4V4I|1|w|G|349
4V4I|1|w|U|350
4V4I|1|w|G|351
4V4I|1|w|G|352

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains